RSBE² Papers

2024

• Alevizos E, Nurdin N, Aris A, Barillé L., 2024. Proximal Sensing for Characterising Seaweed Aquaculture Crop Conditions: Optical Detection of Ice-Ice Disease. Remote Sensing. 2024; 16:3502. https://doi.org/10.3390/rs16183502
• Amit T, Beninger P G, Yahel G., and Loya Y., 2024. The Perks of Life as a Coral-Boring Bivalve. Bulletin Ecological Society of America  https://doi.org/10.1002/bes2.2177
• Amit T, Beninger P G, Yahel G., and Loya Y., 2024. Coral hosts provide more than shelter to boring bivalves. Ecology 105(8): e4376  https://doi.org/10.1002/ecy.4376
• Argyriou AV, Tektonidis N, Alevizos E, Ferentinos KP, Kourgialas NN, Mathioudakis MM. Precision Farming Multimodal Technologies Using Optical Sensors for the Detection of Citrus Tristeza Virus Endemics. Sustainability. 2024; 16:5748. https://doi.org/10.3390/su16135748 
• Arnaldo, M. D. G., Gamage, N. D., Jaffrenou, A., Rabesaotra, V., Mossion, A., Wielgosz-Collin, G., & Méléder, V. (2024). Comparison of different small-scale cultivation methods towards the valorization of a marine benthic diatom strain for lipid production. Algal Research, 103327. 
• Chaumier, T., Yang, F., Manirakiza, E., Ait-Mohamed, O., Wu, Y., Chandola, U., ... & Tirichine, L. (2024). Genome-wide assessment of genetic diversity and transcript variations in 17 accessions of the model diatom Phaeodactylum tricornutum. ISME communications, 4(1), ycad008.
• Croiset, E. Dhivert, N.N. Phuong, C. Grosbois, A. Zalouk-Vergnoux, A. Baltzer, J. Gasperi. Exploring possible controlling factors of spatial distribution of microplastics
  in sediments of a river segment (Loire River, France). Science of the Total Environment 956  177328. https://doi.org/10.1016/j.scitotenv.2024.177328
• Davies B, Oiry S, Rosa P, Zoffoli L, Sousa A, Thomas O, Smale D, Austen M, Biermann L, Attrill M, Roman A, Navarro G, Barillé A-L, Harin N, Clewley D, Martinez-Vicente V, Gernez P, Barillé L, 2024.Intertidal seagrass extent from Sentinel-2 time-series show distinct trajectories in Western Europe. Remote Sensing of Environment, Volume 312,114340, https://doi.org/10.1016/j.rse.2024.114340.
• Davies B, Oiry S, Rosa P, Zoffoli L, Sousa A, Thomas O, Smale D, Austen M, Biermann L, Attrill M, Roman A, Navarro G, Barillé A-L, Harin N, Clewley D, Martinez-Vicente V, Gernez P, Barillé L, 2024. A sentinel watching over inter-tidal seagrass phenology across Western Europe and North Africa. Commun Earth Environ 5, 382 (2024). https://doi.org/10.1038/s43247-024-01543-z
• Davies, B. F. R., Blampied, S., Binney, F., Epstein, G., Chambers, P., & Sheehan, E. V. (2024). Carbon stocks in marine habitats across Jersey’s territorial waters. Regional Studies in Marine Science, 77, 103713.  
• De Oliveira, T., Muresan, B., Ricordel, S., Lumière, L., Truong, X. T., Poirier, L., & Gasperi, J. (2024). Realistic assessment of tire and road wear particle emissions and their influencing factors on different types of roads. Journal of Hazardous Materials, 465, 133301
• De Oliveira, T., Chaillou, M., Roy, S., Caubrière, N., Guillon, M., Mabilais, D., ... & Gasperi, J. (2024). Tire and road wear particles in infiltration pond sediments: Occurrence, spatial distribution, size fractionation and correlation with metals. Science Total Environment, 955, 176855
• Haro, S., Barnett, A., Papaspyrou, S. et al. Radiative energy budgets of migrational microphytobenthic biofilms. Mar Biol 171, 204 (2024). https://doi.org/10.1007/s00227-024-04518-y
  Huguet A., Barillé L., Soudant D., Petitgars P., Gohin F., Lefèbvre A., 2024. Identifying the spatial patterns and the drivers of the decline inthe Eastern English Channel chlorophyll a surface concentration over the last two decades. Marine Pollution Bulletin 
• Oiry, S., Davies, B. F. R., Rosa, P., Zoffoli, M. L., Brunier, G., Sousa, A. I., ... Gernez, P., & Barillé, L. (2024). Discriminating Seagrasses from Green Macroalgae in European Intertidal Areas Using High Resolution Multispectral Drone Imagery. Remote Sensing, 16:4383
• Phuong, N.N., Duong, T.T., Pham, Q.T., Ngo, T.X.T., Nguyen, T.M.D., Le, T.P.Q., Duong, T.N., Dhivert, E., Zalouk-Vergnoux, A., Poirier, L., Gasperi, J. Anthropogenic particle abundance and characteristics in seawater and intertidal sediments of the Tonkin Bay Coast (North Vietnam). Environmental Monitoring and Assessment 196:514. https://doi.org/10.1007/s10661-024-12674-3
• Phuong, Q.T. Pham, T.X.T. Ngo, T.M.D. Nguyen, T.O. Doan, X.C. Nguyen, T.N. Duong, T.P.Q. Le, N.D. Le, N.A. Phuong, J. Gasperi, A. Zalouk-Vergnoux, L. Poirier, T.N. Vu, T.T. Duong. Occurrence of microplastics in bivalves from the northern coast of VietNam. Regional Studies in Marine Science 78 103731. https://doi.org/10.1016/j.rsma.2024.103731
• Pochic, V., Gernez, P., Zoffoli, M. L., Séchet, V., Carpentier, L., & Lacour, T. (2024). Photoacclimation in the kleptoplastidic ciliate Mesodinium rubrum and its cryptophyte prey Teleaulax amphioxeia: phenotypic variability and implications for red tide remote sensing. Journal of Plankton Research, fbad061, https://doi.org/10.1093/plankt/fbad061 
• Renn, C., Rees, S., Rees, A., Davies, B. F., Cartwright, A. Y., Fanshawe, S., ... & Sheehan, E. V. (2024). Lessons from Lyme Bay (UK) to inform policy, management, and monitoring of Marine Protected Areas. ICES Journal of Marine Science, 81, 276-292
• Rétif, J., Zalouk-Vergnoux, A., Kamari, A., Briant, N., Poirier, L. Trophic transfer of rare earth elements in the food web of the Loire estuary (France). Sci. Total Environ. Vol 914, 2024, 169652 
• J. Rétif, N. Briant, A. Zalouk-Vergnoux, P. Le Monier, T. Sireau, L. Poirier. Distribution of rare earth elements and assessment of anthropogenic gadolinium in estuarine habitats: The case of Loire and Seine estuaries in France. Science of the Total Environment 922 171385. https://doi.org/10.1016/j.scitotenv.2024.171385
• J. Rétif, A. Zalouk-Vergnoux, N. Briant, Y. François, L. Poirier. Trophic dilution of rare earth elements along the food chain of the Seine estuary (France). Marine Pollution Bulletin 206 116671. https://doi.org/10.1016/j.marpolbul.2024.116671
• Rizzo, A., Ajò, A., Kang, H., De Cola, L., & Jesus, B. (2024). Development of a new kappa-carrageenan hydrogel system to study benthic diatom vertical movements. Plos one, 19(4), e0297962.
• Román, A., Oiry, S., Davies, B., Rosa, P., Gernez, P., ... & Barillé, L. (2024). Mapping intertidal microphytobenthic biomass with very high-resolution remote sensing imagery in an estuarine system. Science of the Total Environment: 177025
• Vignati, D. A., Martin, L. A., Poirier, L., Zalouk-Vergnoux, A., Fouque, C., Bojic, C., ... & Cossu-Leguille, C. (2024). Ecotoxicity of lanthanides to Daphnia magna: insights from elemental behavior and speciation in a standardized test medium. Peer Community Journal, 4.
• Zarif, M., Rousselot, E., Jesus, B., Tirichine, L., & Duc, C. (2024). H3K27me3 and EZH Are Involved in the Control of the Heat-Stress-Elicited Morphological Changes in Diatoms. International Journal of Molecular Sciences, 25, 8373.

2023

2022

• Aissioui S., Poirier L., Amara R., Ramdane Z. (2022) Concentrations of lead, cadmium and mercury in sardines, Sardina pilchardus (Walbaum, 1792) from the Algerian coast and health risks for consumers. Journal of Food Composition and Analysis, 109, 104490. 
• Brunier G., Oiry S., Gruet Y., Dubois S., Barillé L., (2022). Topographic analysis of intertidal polychaete reefs (Sabellaria alveolata) at a very high spatial resolution. Remote Sensing, 14,307, 736116. 
• Brunier G., Oiry S., Lachaussée N., Barillé L., Le Fouest V., and Méléder V. 2022. "A Machine-Learning Approach to Intertidal Mudflat Mapping Combining Multispectral Reflectance and Geomorphology from UAV-Based Monitoring" Remote Sensing 14, no. 22: 5857. https://doi.org/10.3390/rs14225857 
• Joublin-Delavat A., Touahri K., Crétin P., Morot A, Rodrigues S., Jesus B., Trigodet F. and Delavat F. Genetic and physiological insights into the diazotrophic activity of a non-cyanobacterial marine diazotroph. Environ Microbiol. 2022 Oct 27. doi: 10.1111/1462-2920.16261. 
• Krupandan A. G, Gernez P., Palmer S., Thomas Y., & Barillé L. (2022) Exploring South African Pacific oyster mariculture potential through combined Earth observation and bioenergetics modelling, Aquaculture Reports, 24, 101155. 
• Le Strat, Y., Ruiz, N., Fleurence, J., Pouchus, Y; F., Déléris, P. and Dumay, J. Marine fungal abilities to enzymatically degrade algal polysaccharides, proteins and lipids: a review. J Appl Phycol (2022). https://doi.org/10.1007/s10811-022-02713-2. 
• Otero-Farina A., Retif J., Metais I., Poirier L., Chatel A. 2022. Relevance of cell subcompartmentalization techniques to predict adverse effects of metals in bivalves and fish Ecological Indicators 144 (2022) 109491 
• Ratmaya W., Laverman A. M., Rabouille C., Akbarzadeh Z., Andrieux-Loyer F., Barillé L., Barillé A-L., Le Merrer Y., Souchu P., (2022).Temporal and spatial variations in benthic nitrogen cycling in a temperate macro-tidal coastal ecosystem:  observation and modeling. Continental Shelf Research 235 104649. 
• Reddin C., Decottignies P., Bacouillard L., Barillé L., Dubois S., Echappé C., Gernez P., Jesus B., Méléder V., Nätscher P., Turpin V., Zeppilli D., Zwerschke N., Brind’Amour A. & Cognie B. (2022). Extensive spatial impacts of oyster reefs on an intertidal mudflat community via predator facilitation. Commun. Biol. 5: 250 
• Rétif J., Zalouk-Vergnoux A., Briant N., Poirier L. 2022. From geochemistry to ecotoxicology of rare earth elements in aquatic environments: Diversity and uses of normalization reference materials and anomaly calculation methods. Science of the Total Environment 856 (2023) 158890 
• Rimmer , J , Hubas , C , Wyness , A J , Jesus , B , Hartley , M , Blight , A J , Prins , A & Paterson , D 2022 , ' The response of microphytobenthos to physical disturbance, herbicide, and titanium dioxide nanoparticles exposure ' , Marine Pollution Bulletin , vol. 185 , no. Part B , 1134348 . https://doi.org/10.1016/j.marpolbul.2022.114348 
• Rizzo, A., Ross, M. E., Norici, A., & Jesus, B. (2022). A Two-Step Process for Improved Biomass Production and Non-Destructive Astaxanthin and Carotenoids Accumulation in Haematococcus pluvialis. Applied Sciences, 12(3), 1261. 
• Roca, M., Dunbar, M. B., Román Vázquez, A., Caballero de Frutos, I., Zoffoli, M. L., Gernez, P., & Navarro, G. (2022). Monitoring the Marine Invasive Alien Species Rugulopteryx okamurae using Unmanned Aerial Vehicles (UAVs) and Satellites. Frontiers in Marine Science, 2088.
• Roux P., Siano R., Souchu P., Collin K., Schmitt A., Manach S., ... & Schapira, M. (2022). Spatio-temporal dynamics and biogeochemical properties of green seawater discolorations caused by the marine dinoflagellate Lepidodinium chlorophorum along southern Brittany coast. Estuarine, Coastal and Shelf Science, 275, 107950.
• Schweizer, M., Jauffrais, T., Choquel, C., Méléder, V., Quinchard, S., & Geslin, E. (2022). Trophic strategies of intertidal foraminifera explored with single-cell microbiome metabarcoding and morphological methods: What is on the menu? Ecology and Evolution, 12, e9437. https://doi.org/10.1002/ece3.9437 
• Thibault de Chanvalon A, Geslin E, Mojtahid M, Métais I, Méléder V, Metzger E (2022). Multiscale analysis of living benthic foraminiferal heterogeneity: Ecological advances from an intertidal mudflat (Loire estuary, France). Continental Shelf Research 232: 104627.https://doi.org/10.1016/j.csr.2021.104627. 

2021

• Aissioui S., Poirier L., Amara R., Ramdane Z. (2021) Concentrations of lead, cadmium, and mercury in Mullus barbatus barbatus (L.) from the Algerian coast and health risks associated to its consumption. Regional Studies in Marine Science, 47, 101959. 
• Cartaxana, P... , Hubas C., Jesus B... and Cruz S. (2021) Photosynthesis from stolen chloroplasts can support sea slug reproductive fitness. Proc. R. Soc. B 288: 20211779. https://doi.org/10.1098/rspb.2021.1779 
• Choquel, C., Geslin, E., Metzger, E., Filipsson, H. L., Risgaard-Petersen, N., Launeau P., Giraud, M., Jauffrais, T., Jesus, B., Mouret, A. (2021). Denitrification by benthic foraminifera and their contribution to N-loss from a fjord environment. Biogeosciences, 18, 327-341 
• Cointet, E., Séverin, E., Couzinet-Mossion, A., Méléder, V., Gonçalves, O., & Wielgosz-Collin, G. (2021). Assessment of the lipid production potential of six benthic diatom species grown in airlift photobioreactors. Journal of Applied Phycology, 1-11. 
• Gastineau, R.; Hansen, G.; Poulin, M.; Lemieux, C.; Turmel, M.; Bardeau, J.-F.; Leignel, V.; Hardivillier, Y.; Morançais, M.; Fleurence, J.; Gaudin, P.; Méléder, V.; Cox, E.J.; Davidovich, N.A.; Davidovich, O.I.; Witkowski, A.; Kaczmarska, I.; Ehrman, J.M.; Soler Onís, E.; Quintana, A.M.; Mucko, M.; Mordret, S.; Sarno, D.; Jacquette, B.; Falaise, C.; Séveno, J.; Lindquist, N.L.; Kemp, P.S., Jr.; Eker-Develi, E.; Konucu, M.; Mouget, J.-L. Haslea silbo, A Novel Cosmopolitan Species of Blue Diatoms. Biology 2021, 10, 328. https://doi.org/10.3390/biology10040328 
• Gernez, P., Palmer, S. C., Thomas, Y., & Forster, R. (2021). Remote Sensing for Aquaculture. Frontiers in Marine Science, 7, 1258. 
• Harmel, T., Agagliate, J., Hieronymi M., & Gernez P. (2021). Two-term Reynolds–McCormick phase function parameterization better describes light scattering by microalgae and mineral hydrosols. Optics Letter, 46, 1860-1863. 
• Haro S., Jesus B., Oiry S., Papaspyrou S., Lara M., González C.J., Corzo A. (2021) Microphytobenthos spatio-temporal dynamics across an intertidal gradient using Random Forest classification and Sentinel-2 imagery. Science of The Total Environment, 804,2022, https://doi.org/10.1016/j.scitotenv.2021.149983. 
• Jesus, B., Jauffrais, T., Trampe, E.C.L., Goessling, J.W., Lekieffre, C., Meibom, A., Kühl, M., Geslin, E. (2021) Kleptoplast distribution, photosynthetic efficiency and sequestration mechanisms in intertidal benthic foraminifera. ISME J. https://doi.org/10.1038/s41396-021-01128-0 
• Khalid A, Zalouk-Vergnoux A, Benali S, Mincheva M, Raquez JM, Bertrand S, Poirier L. (2021). Are bio-based and biodegradable microplastics impacting for blue mussel (Mytilus edulis)? Mar. Poll. Bull. 167, 112295, doi.org/10.1016/j.marpolbul.2021.112295. 
• Lortholarie M, Poirier L., Kamari A, Herrenknecht C, Zalouk-Vergnoux A. (2021). Rare earth element organotropism in European eel (Anguilla anguilla). Sci. Total Environ., 719, 142513, doi.org/10.1016/j.scitotenv.2020.142513. 
• Oiry, S., Barillé, L., (2021). Using sentinel-2 satellite imagery to develop microphytobenthos-based water quality indices in estuaries, Ecological Indicators, Volume 121, 107184. 
• Palmer, S. C., Barillé, L., Kay, S., Ciavatta, S., Buck, B., & Gernez, P. (2021). Pacific oyster (Crassostrea gigas) growth modelling and indicators for offshore aquaculture in Europe under climate change uncertainty. Aquaculture, 736116. 
• Ribeiro, L., Benyoucef, I., Poulin, M., Jesus, B., Rosa, P., Méléder, V., ... & Barillé, L. (2021). Spatio-temporal variation of microphytobenthos biomass, diversity and assemblage structure in the Loire Estuary, France. Aquat Microb Ecol, 87, 61-77. 
• Rimet F, Aylagas E, Borja A, Bouchez A, Canino A, Chauvin C, Chonova T, Ciampor Jr F, Costa FO, Ferrari BJD, Gastineau R, Goulon C, Gugger M, Holzmann M, Jahn R, Kahlert M, Kusber W-H, Laplace-Treyture C, Leese F, Leliaert F, Mann DG, Marchand F, Méléder V, Pawlowski J, Rasconi S, Rivera S, Rougerie R, Schweizer M, Trobajo R, Vasselon V, Vivien R, Weigand A, Witkowski A, Zimmermann J, Ekrem T (2021) Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life. Metabarcoding and Metagenomics 5: e58056. https://doi.org/10.3897/mbmg.5.58056 
• Rybak M, Witkowski A, Peszek L, Kociolek JP, Risjani Y, Nguyen DH, Zhang J, Yunianta, Nguyen VD, Gastineau R, Duong TT, Rosa P, Meleder V (2021) Marine and brackish Luticola D.G.Mann (Bacillariophyta) species from the Java Sea and South China Sea coasts with the description of three new species. PhytoKeys 183: 115-142. https://doi.org/10.3897/phytokeys.183.71049 
• Savelli, R., Serôdio, J., Cugier, P., Méléder, V., Polsenaere, P., Dupuy, C., & Le Fouest, V. (2021). Potential impact of photoinhibition on microphytobenthic primary production on a large intertidal mudflat. Journal of Geophysical Research: Biogeosciences, 126, e2021JG006443. https://doi.org/10.1029/2021JG006443 
• Van Bohemen AI, Ruiz N, Zalouk-Vergnoux A, Michaud A, Robiou du Pont T, Druzhinina I, Atanasova L, Prado S, Bodo B, Meslet-Cladiere L, Cochereau B, Bastide F, Maslard C, Marchi M, Guillemette T, Pouchus YF. (2021). Pentadecaibins I–V: 15-Residue Peptaibols Produced by a Marine-Derived Trichoderma sp. of the Harzianum Clade. J. Nat. Prod., 84, 1271-1282, doi.org/10.1021/acs.jnatprod.0c01355. 
• Zoffoli, M. L., Gernez, P., Godet, L., Peters, S., Oiry, S., Barillé, L. Decadal increase in the ecological status of a North-Atlantic intertidal seagrass meadow observed with multi-mission satellite time-series. Ecological Indicators, v130, 2021, 108033. https://doi.org/10.1016/j.ecolind.2021.108033 

2020

• Barillé L, Le Bris A, Goulletquer P, Thomas Y, Glize P, Kane F, Falconer L, Guillotreau P, Trouillet B, Palmer S & Gernez P (2020). Biological, socio-economic, and administrative opportunities and challenges to moving aquaculture offshore for small French oyster-farming companies. Aquaculture, 735045. 
• Barnett A, Méléder V, Dupuy C, & Lavaud J (2020). The vertical migratory rhythm of intertidal microphytobenthos in sediment depends on the light photoperiod, intensity and spectrum: evidence for a positive effect of blue wavelengths. Front. Mar. Sci. 7:212. 
• Cruz S, LeKieffre C, Cartaxana P, Hubas C, Thiney N, Jakobsen S, Escrig S, Jesus B, Kühl M, Calado R & Meibom A (2020). Functional kleptoplasts intermediate incorporation of carbon and nitrogen in cells of the Sacoglossa sea slug Elysia viridis. Sci Rep 10, 10548. 
• Daniel M., Chauvet N., Zalouk-Vergnoux A., Baltzer A. (2020). Les tapis de Haploops, un piégeage naturel des contaminants au seuil de nos estuaires ?. Cahiers Nantais, http://cahiers-nantais.fr/index.php?id=1534. 
• David, V., Tortajada, S., Philippine, O., Bréret, M., Barnett, A., Agogué, H., ... & Dupuy, C. (2019). Ecological succession and resilience of plankton recovering from an acute disturbance in freshwater marshes. Science of The Total Environment, 135997. 
• Lortholarie M, Zalouk-Vergnoux A, Kamari A, François Y, Herrenknecht C, Poirier L. (2020). Rare earth element bioaccumulation in the yellow and silver European eel (Anguilla anguilla): A case study in the Loire estuary (France). Sci. Total Environ. 719, 134938, doi.org/10.1016/j.scitotenv.2019.134938. 
• Lupo C., Bougeard S., Le Bihan V., Blin J.L., Allain G., Azéma P., Benoit F., Béchemin C., Bernard I., Blachier P., Brieau L., Danion M., Garcia A., Gervasoni E., Glize P., Lainé A., Lapègue S., Mablouké C., Poirier L., Raymond J. C., Treilles M., Chauvin C., Le Bouquin S. (2020). Mortality of marine mussels Mytilus edulis and M. galloprovincialis: systematic literature review of risk factors and recommendations for future research. Reviews in Aquaculture, 1-33 . 
• Meleder, V., Savelli, R., Barnett, A., Polseneare, P., Gernez, P., Cugier, P., ... & Lavaud, J. (2020). Mapping the intertidal microphytobenthos Gross Primary Production. Part I: coupling multispectral remote sensing and physical modelling. Front. Mar. Sci.  7: 520. 
• Palmer S., Gernez P., Thomas Y., Simis S., Miller P., Glize P., & Barillé L. (2019) Remote Sensing-Driven Pacific Oyster (Crassostrea gigas) Growth Modeling to Inform Offshore Aquaculture Site Selection. Front. Mar. Sci. 6:802. doi: 10.3389/fmars.2019.00802 
• Prins A, Deleris P, Hubas C, & Jesus B (2020) Effect of Light Intensity and Light Quality on Diatom Behavioral and Physiological Photoprotection. Front. Mar. Sci. 7:203. doi: 10.3389/fmars.2020.0020. 
• Ribeiro L, Brotas V, Hernández-Fariñas T, Jesus B & Barillé L (2020). Assessing alternative microscopy-based approaches to species abundance description of intertidal diatom communities. Front. Mar. Sci. 7:36. 
• Savelli, R., Méléder, V., Cugier, P., Polsenaere, P., Dupuy, C., Lavaud, J., ... & Le Fouest, V. (2020). Mapping the Intertidal Microphytobenthos Gross Primary Production, Part II: Merging Remote Sensing and Physical-Biological Coupled Modeling. Frontiers in Marine Science, 7(521). 
• Serôdio, J., Paterson, D. M., Meleder, V., & Vyverman, W. (2020). Advances and Challenges in Microphytobenthos Research: From Cell Biology to Coastal Ecosystem Function. Frontier. 
• Stévant, P., Ólafsdóttir, A., Déléris, P., Dumay, J., Fleurence, J., Ingadóttir, B., Jónsdóttir, R., Ragueneau, E., Rebours, C., Rustad, T.  (2020) Semi-dry storage as a maturation process for improving the sensory characteristics of the edible red seaweed dulse (Palmaria palmata), Algal Research, vol 51, 102048. 
• Stévant, P., Ólafsdóttir, A., Déléris, P., Dumay, J., Fleurence, J., Ingadóttir, B., Jónsdóttir, R., Ragueneau, E., Rebours, C., Rustad, T. ( 2020) Data on the sensory characteristics and chemical composition of the edible red seaweed dulse (Palmaria palmata) after dry and semi-dry storage, Data in Brief, vol 33, 106343. 
• Verpoorter C, Menuge B, Launeau P, Méléder V, Héquette A, Cartier A, & Sipka, V (2020). Synergy Between Hyperspectral (HYSPEX), Multispectral (SPOT 6/7, Sentinel-.2) Remotely Sensed Data and LiDAR Data for Mapping the Authie Estuary (France). In Estuaries and Coastal Zones in Times of Global Change (pp. 769-788). Springer, Singapore. 
• Zoffoli L., Gernez P., Rosa P., Le Bris A., Brando V., Barillé A-L., Harin N., Peters S., Poser K., Spaias L., Peralta G., Barillé L., (2020). Sentinel-2 remote sensing of Zostera notei-dominated intertidal seagrass meadows. Remote Sensing of Environment. 251:112020. doi:10.1016/j.rse.2020.112020 

2019

• Ameryoun, H., Schoefs, F., Barillé, L., & Thomas, Y. (2019). Stochastic modeling of forces on jacket-type offshore structures colonized by marine growth. Journal of Marine Science and Engineering, 7, 158. 
• Beninger, P. G., & Chérel, D. (2019). Cloaked bivalve oocytes: lessons in evolution, ecology, and scientific awareness. Ecology, e02818. 
• Bonnanfant, M., Jesus, B., Pruvost, J., Mouget, J.-L., Campbell, D. A. (2019) Photosynthetic electron transport transients in Chlorella vulgaris under fluctuating light. Algal Research, 44: 101713. 
• Cartaxana, P., Morelli, L., Jesus, B., Calado, G., Calado, R., Cruz, S. (2019) The photon menace: kleptoplast protection in the photosynthetic sea slug Elysia timida. Journal of Experimental Biology 222: jeb202580 doi: 10.1242/jeb.202580
• Cointet, E., Wielgosz-Collin, G., Méléder, V., & Gonçalves, O. (2019a). Lipids in benthic diatoms: A new suitable screening procedure. Algal Research, 39, 101425. 
• Cointet, E., Wielgosz-Collin, G., Bougaran, G., Rabesaotra, V., Goncalves, O., & Meleder, V. (2019b). Effects of light and nitrogen availability on photosynthetic efficiency and fatty acid content of three original benthic diatom strains. PloS one, 14 
• Jauffrais, T., LeKieffre, C., Schweizer, M., Geslin, E., Metzger, E., Bernhard, J. M., Jesus, B., Filipsson, H. L., Maire, O., and Meibom, A. (2019a). Kleptoplastidic benthic foraminifera from aphotic habitats: insights into assimilation of inorganic C, N and S studied with sub‐cellular resolution. Environmental microbiology, 21: 125-141. 
• Jauffrais, T., LeKieffre, C., Schweizer, M., Jesus, B., Metzger, E., and Geslin, E. (2019b). Response of a kleptoplastidic foraminifer to heterotrophic starvation: photosynthesis and lipid droplet biogenesis. FEMS Microbiology Ecology, 95, fiz046.
• Lebreton, B., Rivaud, A., Picot, L., Prévost, B., Barillé, L., Sauzeau, T., ... & Lavaud, J. (2019). From ecological relevance of the ecosystem services concept to its socio-political use. The case study of intertidal bare mudflats in the Marennes-Oléron Bay, France. Ocean & Coastal Management, 172: 41-54. 
• Poulin, M., Méléder, V. & Mouget J.L (2019). Typification of the first recognized blue pigmented diatom, Haslea ostrearia (Bacillariophyceae). Plant Ecology and Evolution, 152, 402-408. 
• Ratmaya, W., Soudant, D., Salmon-Monviola, J., Plus, M., Cochennec-Laureau, N., Goubert, E., ..., Barillé, L., & Souchu, P. (2019). Reduced phosphorus loads from the Loire and Vilaine rivers were accompanied by increasing eutrophication in the Vilaine Bay (south Brittany, France). Biogeosciences, 16: 1361-1380. 
• Savelli R., Bertin X., Orvain F., Gernez P., ... & Le Fouest V (2019). Impact of chronic and massive resuspension mechanisms on the microphytobenthos dynamics in a temperate intertidal mudflat. Journal of Geophysical Research: Biogeosciences. doi: 10.1029/2019JG005369 
• Stramski D., Reynolds R. A., Gernez P., Röttgers R., and Wurl O. (2019). Inherent optical properties and particle characteristics of the sea-surface microlayer. Progress in Oceanography, 176:102117. 

2018

2017

• Barillé, L., Le Bris, A., Méléder, V., Launeau, P., Robin, M., Louvrou, I., & Ribeiro, L. (2017). Photosynthetic epibionts and endobionts of Pacific oyster shells from oyster reefs in rocky versus mudflat shores. PloS one, 12: e0185187. 
• Chérel, D., & Beninger, P. G. (2017). Oocyte atresia characteristics and effect on reproductive effort of Manila Clam Tapes philippinarum (Adams and Reeve, 1850). Journal of Shellfish Research, 36: 549-558. 
• Dutertre, M., Ernande, B., Haure, J., & Barillé, L. (2017). Spatial and temporal adjustments in gill and palp size in the oyster Crassostrea gigas. Journal of Molluscan Studies, 83: 11-18. 
• Hernández Fariñas, T., Ribeiro, L., Soudant, D., Belin, C., Lampert, L., & Barillé, L. (2017). Contribution of benthic microalgae to the temporal variation in phytoplankton assemblages in a macrotidal system. Journal of phycology, 53:1020-1034 
• Gernez, P., Doxaran, D., & Barillé, L. (2017). Shellfish aquaculture from space: potential of Sentinel2 to monitor tide-driven changes in turbidity, chlorophyll concentration and oyster physiological response at the scale of an oyster farm. Frontiers in Marine Science, 4, 137, doi: 10.3389/fmars.2017.00137 
• Hubas, C., Boeuf, D., Jesus, B., Thiney, N., Bozec, Y., & Jeanthon, C. (2017). A nanoscale study of carbon and nitrogen fluxes in mats of purple sulfur bacteria: implications for carbon cycling at the surface of coastal sediments. Frontiers in microbiology, 8: 1995. 
• Jauffrais, T., Jesus, B., Méléder, V., & Geslin, E. (2017). Functional xanthophyll cycle and pigment content of a kleptoplastic benthic foraminifer: Haynesina germanica. PloS one, 12: e0172678. 
• Kandilian, R., Jesus, B., Legrand, J., Pilon, L., & Pruvost, J. (2017). Light transfer in agar immobilized microalgae cell cultures. Journal of Quantitative Spectroscopy and Radiative Transfer, 198: 81-92. 
• Novoa, S., Doxaran, D., Ody, A., Vanhellemont, Q., Lafon, V., Lubac, B., & Gernez, P. (2017). Atmospheric corrections and multi-conditional algorithm for multi-sensor remote sensing of suspended particulate matter in low-to-high turbidity levels coastal waters. Remote Sensing, 9: 61. 
• Prasetiya, F. S., Decottignies, P., Barillé, L., Gastineau, R., Jacquette, B., Figiel, A., ... & Cognie, B. (2017). Cell size-based, passive selection of the blue diatom Haslea ostrearia by the oyster Crassostrea gigas. Journal of Molluscan Studies, 83: 145-152. 
• Soissons, L. M., Van Katwijk, M. M., Peralta, G., Brun, F. G., Cardoso, P. G., Grilo, T. F., ... & Ganthy, F. (2018). Seasonal and latitudinal variation in seagrass mechanical traits across Europe: The influence of local nutrient status and morphometric plasticity. Limnology and Oceanography, 63: 37-46.